Draft a Data Acquisition Log standard operating procedure outlining mandatory fields for metadata upload to LIMS v9.4, variable naming conventions for raw mass spectrometry (.raw) files acquired on the Thermo Orbitrap Exploris 240, and chain-of-custody checkpoints prior to downstream omics analysis pipelines

Generate draft a data acquisition log standard operating procedure outlining mandatory fields for metadata upload to lims v9.4, variable naming conventions for raw mass spectrometry (.raw) files acquired on the thermo orbitrap exploris 240, and chain-of-custody checkpoints prior to downstream omics analysis pipelines for Scientific Research and Development Services industry

Scientific Research and Development Services

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Allowed: RAW

Max size: 4000MB

Upload the .raw mass spectrometry data file captured on the Thermo Orbitrap Exploris 240 to begin metadata extraction
Select the specific proteomics or metabolomics study design driving this acquisition
Provide critical sample provenance tags that will become part of the mandatory LIMS v9.4 metadata upload
Specify the chromatography-MS configuration used for acquisition
List sequential custody checkpoints with timestamps confirming sample integrity from extraction to injection
Provide pre-acquisition QC thresholds used to validate instrument performance before this file was acquired
Designate the approved downstream omics analysis pipeline based on sample type and study design
Provide the Institutional Review Board approval or ethics identifier required for regulatory compliance and LIMS upload
Specify the regulatory and quality framework governing data handling for this acquisition
Provide analyst contact details who is accountable for data integrity and can answer follow-up questions regarding this acquisition